23902 (CLPB1) ClpB_D2-small
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23902 chr_9 (CLPB1) ClpB_D2-small 61422 63932 - ClpB_D2-small

Synonyms

NCBI ID Ensembl Genomes exon ID
7451029 Thaps23902.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0188

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0025
 0.38

Most Highly Correlated Transcripts

13156

(ACS1) AFD_class_I superfamily
0.8839

268446

(CLPC1) clpA
0.8704

34191

CobN_like
0.8654

1383

(PDS1) phytoene_desat
0.8627

268243

hypothetical protein
0.8613

37596

SpoT
0.8563

10055

hypothetical protein
0.8538

31829

CBS_like
0.8523

3354

hypothetical protein
0.851

23651

hypothetical protein
0.8487

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 81.4235 9.88E-18 505 - 663 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 81.4235 9.88E-18 505 - 663 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 81.4235 9.88E-18 505 - 663 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 81.4235 9.88E-18 505 - 663 superfamily 267297
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... cl11083 107.867 1.27E-27 699 - 779 specific 255983
ClpB_D2-small superfamily C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... - 107.867 1.27E-27 699 - 779 superfamily 264218
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 67.7837 3.57E-13 534 - 653 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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