2400 MFS_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2400 chr_2 MFS_1 897940 899905 + MFS_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7450246 Thaps2400.5, Thaps2400.4, Thaps2400.2, Thaps2400.1, Thaps2400.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0437

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

2399

Str_synth superfamily
0.8497

3630

hypothetical protein
0.8216

25517

hypothetical protein
0.7715

23750

hypothetical protein
0.7646

11296

(Tp_fungal_TRF3) regulator [Rayko]
0.7466

11268

hypothetical protein
0.7418

5638

hypothetical protein
0.7418

13556

BglC
0.7396

43150

PolyPPase_VTC4_like
0.735

35186

PRK13357
0.729

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 84.2877 5.58E-18 49 - 433 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 84.2877 5.58E-18 49 - 433 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 106.35 2.00E-25 52 - 422 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35250 PHATRDRAFT_35250 179650 249453 217667 Not available Not available 478682

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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