24305 Ubox
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24305 chr_11a Ubox 205955 208523 - Ubox

Synonyms

NCBI ID Ensembl Genomes exon ID
7443269 Thaps24305.3, Thaps24305.1, Thaps24305.2, Thaps24305.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0436

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0022
 0.44

Most Highly Correlated Transcripts

23598

COG3899
0.8752

42687

COPIIcoated_ERV
0.8488

bd1959

(bd1959) NA
0.8487

bd1861

(bd1861) PTZ00141
0.8455

3136

hypothetical protein
0.8414

11072

hypothetical protein
0.8378

21339

hypothetical protein
0.8329

25125

hypothetical protein
0.8319

8733

hypothetical protein
0.8304

1551

hypothetical protein
0.8265

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ubox Modified RING finger domain; Modified RING finger domain, without the full complement of Zn2+-... cl17544 78.0457 1.60E-17 641 - 692 specific 128780
U-box superfamily U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding... - 78.0457 1.60E-17 641 - 692 superfamily 266741

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50220 PHATRDRAFT_50220 Not available 320337 78660 Cre17.g743847.t1.1 Not available 494414

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0000151 GO:0004842 GO:0016567 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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