24417 CBM35_pectate_lyase-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24417 chr_12 CBM35_pectate_lyase-like 101739 111725 - CBM35_pectate_lyase-like

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0330

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0085
 0.45

Most Highly Correlated Transcripts

bd690

(bd690) NA
0.9647

bd738

(bd738) NA
0.9434

bd1801

(bd1801) NA
0.941

bd737

(bd737) NA
0.9086

bd1934

(bd1934) NA
0.8802

bd643

(bd643) NA
0.8589

bd1946

(bd1946) NA
0.8481

bd877

(bd877) NA
0.831

bd1959

(bd1959) NA
0.8236

bd1813

(bd1813) NA
0.8218

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CBM35_pectate_lyase-like Carbohydrate Binding Module family 35 (CBM35), pectate lyase-like; appended mainly to enzymes that... cl14880 130.019 6.17E-34 499 - 633 specific 193487
CBM6-CBM35-CBM36_like superfamily Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily; Carbohydrate binding module family... - 130.019 6.17E-34 499 - 633 superfamily 265472
DUF1800 superfamily Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown... - 94.6338 5.71E-20 1921 - 2183 superfamily 268242
DUF1501 superfamily Protein of unknown function (DUF1501); This family contains a number of hypothetical bacterial... - 109.163 6.94E-25 2224 - 2639 superfamily 268208
DUF1800 superfamily Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown... - 94.6338 5.71E-20 1921 - 2183 superfamily 268242

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0030246 -

GO:0030246

carbohydrate binding

Details: 
Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
GO Category: 
MF

Add comment

Log in to post comments