24601 CbiX_SirB_NThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24601	chr_13	CbiX_SirB_N	170864	173908	+	CbiX_SirB_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445705	Thaps24601.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0291

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0114	0.48	0.0000000000017 0.0046

Most Highly Correlated Transcripts

11397 hypothetical protein 0.8797	268519 hypothetical protein 0.8663	263424 PLN02551 0.8649	15950 Peptidase_A22B superfamily 0.8584	5265 VEFS-Box superfamily 0.8326	38472 HA2 0.8312
37539 cpn10 0.8307	268062 PRK14293 0.8298	3007 hypothetical protein 0.8281	35164 acolac_lg 0.8235

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CbiX_SirB_N		Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal...	cl02784	79.9232	1.53E-17	243 - 349	specific	239509
Chelatase_Class_II superfamily		Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the...	-	79.9232	1.53E-17	243 - 349	superfamily	261446
SbcC		ATPase involved in DNA repair [DNA replication, recombination, and repair]	-	71.7151	5.51E-13	494 - 938	multi-dom	223496

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	164170	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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