24683 Raptor_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24683 chr_13 Raptor_N 648705 654129 - Raptor_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7446957 Thaps24683.2, Thaps24683.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0128

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0080
 0.40

Most Highly Correlated Transcripts

5298

hypothetical protein
0.9172

24997

hypothetical protein
0.9045

11261

WD40 superfamily
0.9027

36337

Vps35 superfamily
0.9015

7584

pepsin_like
0.8998

12836

EEP superfamily
0.899

21852

hypothetical protein
0.8965

21580

RNB
0.8917

24063

COG3899
0.8917

24618

hypothetical protein
0.8912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Raptor_N superfamily Raptor N-terminal CASPase like domain; This domain is found at the N-terminus of the Raptor protein... - 242.944 2.84E-73 255 - 410 superfamily 258678
Raptor_N superfamily Raptor N-terminal CASPase like domain; This domain is found at the N-terminus of the Raptor protein... - 242.944 2.84E-73 255 - 410 superfamily 258678
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 105.88 2.12E-24 1452 - 1746 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 85.9107 2.46E-17 1406 - 1746 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_18549 PHATR_18549 201459 246784 252746 Cre08.g371957.t1.1 AT3G08850.1 483980

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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