25096 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25096	chr_16a	RING	27247	30717	+	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449961	Thaps25096.2, Thaps25096.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0492

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0124	0.37	3.7 660

Most Highly Correlated Transcripts

263610 COG3899 0.8915	22908 hypothetical protein 0.8675	264261 COG3899 0.8494	261357 NAD_binding_8 superfamily 0.8437	11106 hypothetical protein 0.8353	bd1891 (bd1891) COG3899 0.8266
21676 DUF2252 superfamily 0.8215	9257 COG3899 0.8198	24434 hypothetical protein 0.8148	20989 hypothetical protein 0.8092

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	69.0116	3.12E-14	956 - 1003	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	69.0116	3.12E-14	956 - 1003	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	165109	101227	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004182 GO:0006508 GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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