9257 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9257	chr_12	COG3899	1029488	1034957	-	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443206	Thaps9257.4, Thaps9257.5, Thaps9257.3, Thaps9257.2, Thaps9257.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0406

Most Highly Correlated Transcripts

263610 COG3899 0.9296	4672 hypothetical protein 0.9135	10298 hypothetical protein 0.912	25078 hypothetical protein 0.9043	24852 hypothetical protein 0.9033	22947 zf-UBR 0.9007
9860 hypothetical protein 0.9002	264262 COG3899 0.8948	263599 COG3899 0.8931	3704 PDEase_I 0.8929

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	70.1841	1.75E-13	790 - 971	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	70.1841	1.75E-13	790 - 971	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	187.991	5.74E-49	791 - 1533	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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