25107 U-box superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25107 chr_16a U-box superfamily 109745 112215 + U-box superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449972 Thaps25107.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0488

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0154
 0.36

Most Highly Correlated Transcripts

bd738

(bd738) NA
0.9413

bd1801

(bd1801) NA
0.9379

bd1813

(bd1813) NA
0.9135

bd1802

(bd1802) NA
0.9111

bd739

(bd739) NA
0.9044

7335

hypothetical protein
0.877

bd1877

(bd1877) NA
0.8542

25476

OTU
0.829

23215

Ubox
0.8182

bd690

(bd690) NA
0.8112

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
U-box superfamily U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding... - 68.4916 4.96E-14 104 - 168 superfamily 266741

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0016567 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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