25130 PGDH_like_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25130 chr_16a PGDH_like_3 218521 220298 - PGDH_like_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7442513 Thaps25130.2, Thaps25130.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.9395

bd846

(bd846) NA
0.8438

bd1221

(bd1221) recQ_fam
0.8264

30478

(hisH) PLN02617
0.8242

bd687

(bd687) NA
0.8095

bd894

(bd894) Peptidase_M14_like superfamily
0.809

264623

SpoVK
0.8056

bd719

(bd719) NA
0.8018

bd1023

(bd1023) atpD
0.7982

10273

zf-met2
0.7958

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PGDH_like_3 Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate... cl17240 340.692 4.47E-114 55 - 362 specific 240651
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 340.692 4.47E-114 55 - 362 superfamily 266580
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 79.0888 2.75E-18 377 - 450 superfamily 263730

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 204281 196774 420632 Cre07.g344550.t1.2 Not available 345297

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0008152 GO:0016597 GO:0006564 GO:0016616 GO:0004617 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016597

amino acid binding

Details: 
Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO Category: 
MF

GO:0006564

L-serine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0004617

phosphoglycerate dehydrogenase activity

Details: 
Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
GO Category: 
MF

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