25198 HAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25198	chr_17	HA	15842	19267	-	HA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450327	Thaps25198.4, Thaps25198.1, Thaps25198.8, Thaps25198.6, Thaps25198.3, Thaps25198.7, Thaps25198.10, Thaps25198.5, Thaps25198.9, Thaps25198.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0425

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0243	0.36	2600 820

Most Highly Correlated Transcripts

21220 KU superfamily 0.9211	5153 hypothetical protein 0.9164	13459 HslU 0.9104	12836 EEP superfamily 0.908	5778 hypothetical protein 0.9056	21133 COG3899 0.9054
1275 hypothetical protein 0.9012	263012 Ras_like_GTPase superfamily 0.8986	22823 Maf1 superfamily 0.8965	261158 calcium channel 0.8958

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	63.0933	3.34E-12	516 - 580	superfamily	251968
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	63.0933	3.34E-12	516 - 580	superfamily	251968

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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