25246 RRM_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25246 chr_17 RRM_SF superfamily 262485 265589 + RRM_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453146 Thaps25246.2, Thaps25246.3, Thaps25246.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0308

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0058
 0.44

Most Highly Correlated Transcripts

bd1946

(bd1946) NA
0.9087

bd1439

(bd1439) ycf35
0.9014

bd1934

(bd1934) NA
0.8809

bd690

(bd690) NA
0.8757

25307

hypothetical protein
0.8456

bd1790

(bd1790) NA
0.844

bd1801

(bd1801) NA
0.8306

bd1756

(bd1756) NA
0.8302

25065

hypothetical protein
0.83

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8232

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 94.9601 3.17E-23 543 - 606 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 72.287 5.34E-14 526 - 600 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41450 PHATRDRAFT_41450 143082 68371 Not available Not available Not available 259444

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004402 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004402

histone acetyltransferase activity

Details: 
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
GO Category: 
MF

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