25248 MATE_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25248	chr_17	MATE_like superfamily	273297	277418	-	MATE_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444201	Thaps25248.3, Thaps25248.4, Thaps25248.2, Thaps25248.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0196

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0274	0.39	0.0012 6

Most Highly Correlated Transcripts

37662 ATPase-IIA1_Ca 0.8893	24862 hypothetical protein 0.8847	263653 P-ATPase-V 0.8841	7602 hypothetical protein 0.8766	bd634 (bd634) NA 0.8708	bd1192 (bd1192) Acyl_ACP_Desat 0.8683
bd624 (bd624) Glyco_transf_34 superfamily 0.864	6592 TroA-like superfamily 0.8639	23616 Peptidase_A22B superfamily 0.8619	1554 Glyco_hydro_81 superfamily 0.8611

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MATE_like superfamily		Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins...	-	229.15	2.53E-65	23 - 567	superfamily	263758

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32178	PHATRDRAFT_32178	148456	322611	417671	Cre10.g431150.t1.1	AT5G07630.1	259769

KEGG

KEGG description	KEGG Pathway
N-Glycan biosynthesis	map00510

GO Terms

GO:0000280 GO:0016021 -

Add comment

Log in to post comments