25388 COG0116
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25388 chr_18 COG0116 529888 531745 + COG0116

Synonyms

NCBI ID Ensembl Genomes exon ID
7444792 Thaps25388.2, Thaps25388.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0153

Most Highly Correlated Transcripts

24852

hypothetical protein
0.8911

4312

hypothetical protein
0.8773

263610

COG3899
0.8709

6357

hypothetical protein
0.8693

4047

hypothetical protein
0.8691

263599

COG3899
0.8678

8762

SNF2_N
0.867

10613

(Tp_HSF_4.2c) HSF_DNA-bind
0.8659

23754

hypothetical protein
0.8625

11072

hypothetical protein
0.8614

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
THUMP_AdoMetMT THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of this... cl12076 61.0569 4.59E-11 142 - 370 specific 212584
THUMP superfamily THUMP domain, predicted to bind RNA; The THUMP domain is named after THioUridine synthases, RNA... - 61.0569 4.59E-11 142 - 370 superfamily 264537
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 70.4018 4.36E-14 381 - 565 superfamily 266528
COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] - 157.855 8.20E-43 140 - 601 multi-dom 223194

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44970 PHATRDRAFT_44970 Not available 327564 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006306 GO:0008170 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006306

DNA methylation

Details: 
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
GO Category: 
BP

GO:0008170

N-methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule.
GO Category: 
MF

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