25392 KRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25392	chr_18	KR	542992	574448	-	KR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444796	Thaps25392.42, Thaps25392.3, Thaps25392.32, Thaps25392.10, Thaps25392.27, Thaps25392.18, Thaps25392.55, Thaps25392.21, Thaps25392.41, Thaps25392.61, Thaps25392.60, Thaps25392.39, Thaps25392.26, Thaps25392.48, Thaps25392.9, Thaps25392.52, Thaps25392.11, Thaps25392.29, Thaps25392.14, Thaps25392.23, Thaps25392.47, Thaps25392.17, Thaps25392.7, Thaps25392.51, Thaps25392.59, Thaps25392.35, Thaps25392.46, Thaps25392.57, Thaps25392.31, Thaps25392.12, Thaps25392.62, Thaps25392.53, Thaps25392.13, Thaps25392.30, Thaps25392.28, Thaps25392.8, Thaps25392.45, Thaps25392.6, Thaps25392.56, Thaps25392.38, Thaps25392.5, Thaps25392.33, Thaps25392.54, Thaps25392.34, Thaps25392.50, Thaps25392.37, Thaps25392.15, Thaps25392.19, Thaps25392.58, Thaps25392.43, Thaps25392.2, Thaps25392.44, Thaps25392.25, Thaps25392.16, Thaps25392.20, Thaps25392.36, Thaps25392.24, Thaps25392.49, Thaps25392.40, Thaps25392.1, Thaps25392.4, Thaps25392.22

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0309

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0034	0.54

Most Highly Correlated Transcripts

bd690 (bd690) NA 0.928	bd738 (bd738) NA 0.8848	bd1801 (bd1801) NA 0.8847	bd737 (bd737) NA 0.8752	bd1934 (bd1934) NA 0.8713	bd1946 (bd1946) NA 0.8712
bd1877 (bd1877) NA 0.8614	bd1823 (bd1823) SCP superfamily 0.8493	bd1439 (bd1439) ycf35 0.8329	bd1851 (bd1851) NA 0.8301

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
KR		Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides...	cl00100	116.323	3.63E-29	5641 - 5718	specific	238056
KR superfamily		Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides...	-	116.323	3.63E-29	5641 - 5718	superfamily	260190
COG2931		RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and...	-	82.737	1.41E-15	7213 - 7694	multi-dom	225483

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	313515	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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