25396 YbaB_DNA_bd superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25396	chr_18	YbaB_DNA_bd superfamily	594191	594930	+	YbaB_DNA_bd superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444802	Thaps25396.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0013

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0149	0.40	0.00066 1.8

Most Highly Correlated Transcripts

261608 PLN02585 0.9365	270222 0.9093	22396 hypothetical protein 0.9082	261882 Thioredoxin_like superfamily 0.9062	38608 SDR_a5 0.9023	31169 PRX_BCP 0.8995
261499 MttA_Hcf106 superfamily 0.8899	21295 YCII superfamily 0.8793	3974 (UroD2) URO-D 0.8778	36078 PRX5_like 0.8745

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
YbaB_DNA_bd superfamily		YbaB/EbfC DNA-binding family; This is a family of DNA-binding proteins. Members of this family form...	-	61.7379	4.16E-13	67 - 182	superfamily	260460

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49377	PHATRDRAFT_49377	190092	234760	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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