5273 DUF221 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5273	chr_5	DUF221 superfamily	771641	777430	+	DUF221 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449584	Thaps5273.3, Thaps5273.5, Thaps5273.2, Thaps5273.1, Thaps5273.4, Thaps5273.7, Thaps5273.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0397

Most Highly Correlated Transcripts

263610 COG3899 0.916	263599 COG3899 0.9129	263997 (APA1) Adaptin_N 0.9102	5630 Vps51 0.9049	22533 hypothetical protein 0.9043	5780 hypothetical protein 0.9021
24063 COG3899 0.8948	24035 Peptidase_C19 superfamily 0.893	263994 Adaptin_N 0.8908	23207 hypothetical protein 0.8891

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF221 superfamily		Domain of unknown function DUF221; This family consists of hypothetical transmembrane proteins none...	-	104.526	8.17E-24	1210 - 1539	superfamily	251491

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46639	PHATR_46639	259702	286916	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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