25775 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25775	chr_22	RING	811832	813856	+	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448226	Thaps25775.1, Thaps25775.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0130

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0048	0.39	71000 7300

Most Highly Correlated Transcripts

268652 ATG11 superfamily 0.8861	32899 HlyIII superfamily 0.8725	30701 PRK05279 0.8668	19897 (Tp_Myb4R3) MYB DNA binding protein/ transcription factor-like protein 0.8665	25505 hypothetical protein 0.8655	3661 MMCE 0.8577
5340 hypothetical protein 0.8565	26473 MPP_PP2A_PP4_PP6 0.8506	11797 2A0121 0.8465	18841 RRM_RBM8 0.8461

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	67.4708	5.34E-14	434 - 477	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	67.4708	5.34E-14	434 - 477	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48034	PHATRDRAFT_48034	253436	Not available	202611	Not available	AT5G66160.1	472659

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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