268652 ATG11 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268652	chr_4	ATG11 superfamily	713904	716236	+	ATG11 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452635	Thaps268652.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0142

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0152	0.38	0.14 0.024

Most Highly Correlated Transcripts

263866 AAK superfamily 0.9199	2451 PH-like superfamily 0.9188	42646 PRK04342 0.9174	1186 hypothetical protein 0.9155	33717 PLN02856 0.9138	262554 Abhydrolase_3 0.9131
240 AAT_I superfamily 0.9128	268896 DnaQ_like_exo superfamily 0.912	10860 Methyltransf_21 0.906	15819 Arginase_HDAC superfamily 0.9059

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ATG11 superfamily		Autophagy-related protein 11; The function of this family is conflicting. In the fission yeast,...	-	85.4355	1.77E-19	586 - 715	superfamily	255948

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44229	PHATR_44229	277076	318757	Not available	Not available	AT4G30790.1	561675

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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