25861 TPR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25861 chr_23 TPR 313937 315233 - TPR

Synonyms

NCBI ID Ensembl Genomes exon ID
7448899 Thaps25861.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0013

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0197
 0.29

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8938

bd687

(bd687) NA
0.8792

bd1662

(bd1662) TIGR00367
0.873

24343

hypothetical protein
0.8656

8414

NA
0.8639

33035

YGGT
0.8636

6472

hypothetical protein
0.8629

43120

PDI_a_family
0.8626

1512

hypothetical protein
0.8548

22963

WD40 superfamily
0.8547

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 71.2571 8.98E-16 8 - 106 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 71.2571 8.98E-16 8 - 106 superfamily 238112
TPR_11 TPR repeat; TPR repeat. - 56.9383 8.21E-11 6 - 72 multi-dom 257739

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1626 PHATRDRAFT_bd1626 193975 285997 451334 Cre03.g151100.t1.1 AT3G07370.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments