2609 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2609 chr_2 WD40 superfamily 1405914 1407804 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443042 Thaps2609.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0186
 0.38

Most Highly Correlated Transcripts

25824

hypothetical protein
0.878

21163

hypothetical protein
0.8763

2920

PRK05764
0.8726

21933

RNA_pol_I_A49 superfamily
0.8724

264345

SpoU
0.87

34021

Methyltrn_RNA_3
0.8668

42821

PRK14333
0.8659

39845

(DNA_TopoIV) PRK05560
0.8646

26492

PRK05385
0.8641

29144

PRK06349
0.8621

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 82.768 9.73E-18 166 - 468 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 64.3395 3.86E-11 166 - 475 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 14051 Not available Not available Not available 335652

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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