34021 Methyltrn_RNA_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34021 chr_5 Methyltrn_RNA_3 616760 618366 + Methyltrn_RNA_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7451783 Thaps34021.2, Thaps34021.1, Thaps34021.4, Thaps34021.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

21959

hypothetical protein
0.9545

bd1807

(bd1807) RRS1 superfamily
0.9354

34176

AdoMet_MTases superfamily
0.9353

22334

hypothetical protein
0.9341

268880

WD40 superfamily
0.9326

29144

PRK06349
0.9326

37374

PseudoU_synth superfamily
0.9283

38662

BING4CT
0.9277

264345

SpoU
0.9267

24038

hypothetical protein
0.9263

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Methyltrn_RNA_3 Putative RNA methyltransferase; This family has a TIM barrel-like fold with a deep C-terminal... cl12077 295.404 5.53E-97 73 - 392 specific 251405
Methyltrn_RNA_3 superfamily Putative RNA methyltransferase; This family has a TIM barrel-like fold with a deep C-terminal... - 295.404 5.53E-97 73 - 392 superfamily 264538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14068 PHATRDRAFT_14068 201513 256290 310898 Cre16.g670617.t1.1 AT5G19300.1 551704

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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