260974 MATE_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260974	chr_1	MATE_like superfamily	1654290	1656352	+	MATE_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451555	Thaps260974.5, Thaps260974.6, Thaps260974.2, Thaps260974.3, Thaps260974.4, Thaps260974.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0023

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0063	0.47	47 0.059

Most Highly Correlated Transcripts

bd668 (bd668) NA 0.9357	bd1863 (bd1863) NA 0.9307	bd1078 (bd1078) NA 0.9305	bd843 (bd843) NA 0.9204	bd1820 (bd1820) Fasciclin 0.9193	bd890 (bd890) NA 0.9189
bd529 (bd529) SNF2_N 0.9185	bd1387 (bd1387) psbE 0.9166	bd1306 (bd1306) NA 0.9155	bd794 (bd794) NA 0.9113

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MATE_like superfamily		Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins...	-	144.626	4.79E-38	116 - 541	superfamily	263758
NorM		Na+-driven multidrug efflux pump [Defense mechanisms]	-	114.629	1.06E-27	116 - 545	multi-dom	223608

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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