260998 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260998 chr_1 Aa_trans superfamily 1771933 1773416 - Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442899 Thaps260998.3, Thaps260998.2, Thaps260998.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0286

Most Highly Correlated Transcripts

33970

rad25
0.8505

8762

SNF2_N
0.8381

263610

COG3899
0.8367

263599

COG3899
0.828

268146

hypothetical protein
0.8261

262616

(MYB22)
0.8238

bd1939

(bd1939) NA
0.8231

10398

hypothetical protein
0.8185

12836

EEP superfamily
0.8184

15545

hypothetical protein
0.8133

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 177.875 1.10E-50 76 - 443 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre02.g115300.t1.1 AT3G30390.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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