261124 PLN02819
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261124 chr_1 PLN02819 2568327 2572384 + PLN02819

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9833

bd1841

(bd1841) CAP10 superfamily
0.9734

bd410

(bd410) HNHc
0.9705

36291

PLN02528
0.9381

bd1808

(bd1808) NA
0.929

bd1941

(bd1941) NA
0.9036

22395

hypothetical protein
0.8977

269127

(ACD3) ACAD superfamily
0.8926

32067

PTZ00182
0.8879

795

TPP_E1_PDC_ADC_BCADC
0.8842

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LKR_SDH_like bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme; Bifunctional lysine... cl17240 666.184 0 54 - 499 specific 240665
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 666.184 0 54 - 499 superfamily 266580
SDH_N_domain Saccharopine dehydrogenase N-terminal domain; SDH N-terminal domain is named due to its appearance... cl19054 96.8287 3.40E-23 518 - 638 specific 213387
SDH_N_domain superfamily Saccharopine dehydrogenase N-terminal domain; SDH N-terminal domain is named due to its appearance... - 96.8287 3.40E-23 518 - 638 superfamily 267407
PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase - 1634.51 0 55 - 1059 multi-dom 215439

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54394 PHATRDRAFT_54394 264866 Not available 74668 Not available AT4G33150.2 552101

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006118 GO:0016491 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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