261472 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261472	chr_2	WD40 superfamily	1594171	1596333	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443082	Thaps261472.2, Thaps261472.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0474

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0095	0.37	17 410000

Most Highly Correlated Transcripts

37638 HrpA 0.9249	263963 Adaptin_N 0.9243	4358 hypothetical protein 0.9151	32217 MA3 0.9126	264679 Syja_N 0.9093	21655 hypothetical protein 0.9083
262025 GH18_chitinase-like superfamily 0.9013	10873 NA 0.8983	11371 hypothetical protein 0.8951	263978 (Tp_HSF_4.2b) HSF_DNA-bind 0.8948

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	71.212	5.97E-14	364 - 472	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	72.8139	7.33E-14	364 - 563	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42687	PHATRDRAFT_42687	263721	321498	Not available	Cre16.g655400.t1.1	AT5G43930.3	556290

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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