261481 FTO_NTDThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261481	chr_2	FTO_NTD	1668182	1670165	-	FTO_NTD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443095	Thaps261481.3, Thaps261481.2, Thaps261481.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0235

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0070	0.44	0.00068 410

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.9186	267979 HCO3_cotransp superfamily 0.9153	bd870 (bd870) LRR_RI superfamily 0.9147	23714 hypothetical protein 0.8866	23469 Plus-3 0.8861	40200 TRX_reduct 0.8854
1905 hypothetical protein 0.8834	22627 hypothetical protein 0.8772	13308 PLN02948 0.8753	260852 PRK04194 0.8723

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FTO_NTD superfamily		FTO catalytic domain; This domain is the catalytic AlkB-like domain from the FTO protein. This...	-	384.127	8.77E-130	89 - 363	superfamily	257415
FTO_NTD superfamily		FTO catalytic domain; This domain is the catalytic AlkB-like domain from the FTO protein. This...	-	384.127	8.77E-130	89 - 363	superfamily	257415
FTO_CTD superfamily		FTO C-terminal domain; This domain is found at the C-terminus of the FTO protein which was shown to...	-	260.044	6.10E-83	366 - 557	superfamily	193407

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	257858	5689	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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