261566 Bud13Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261566	chr_2	Bud13	2186326	2187911	-	Bud13

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450433	Thaps261566.2, Thaps261566.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0247

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0211	0.43	0.64 2

Most Highly Correlated Transcripts

24585 Syntaxin-6_N superfamily 0.8682	24158 NIF superfamily 0.8621	22385 SAC3_GANP 0.8594	40200 TRX_reduct 0.8586	35248 HepA 0.8541	8144 hypothetical protein 0.854
268136 COG1054 0.8527	6086 hypothetical protein 0.8526	15114 Zinc_peptidase_like superfamily 0.8514	6648 hypothetical protein 0.8493

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Bud13 superfamily		Pre-mRNA-splicing factor of RES complex; This entry is characterized by proteins with alternating...	-	112.015	2.15E-29	332 - 476	superfamily	255519
Bud13 superfamily		Pre-mRNA-splicing factor of RES complex; This entry is characterized by proteins with alternating...	-	112.015	2.15E-29	332 - 476	superfamily	255519

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	225500	296853	63504	Cre01.g003487.t1.1	AT1G31870.2	491837

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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