261867 (rfC_2) PRK12402Thalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261867	chr_3	(rfC_2) PRK12402	1502007	1503267	-	PRK12402

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449502	Thaps261867.2, Thaps261867.1, Thaps261867.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0184

Most Highly Correlated Transcripts

9617 SNC1 0.8668	11218 hypothetical protein 0.8423	10348 hypothetical protein 0.8329	7460 hypothetical protein 0.831	262700 Dpy-30 superfamily 0.8304	3649 hypothetical protein 0.8167
bd894 (bd894) Peptidase_M14_like superfamily 0.8111	17468 CK_II_beta 0.8111	9425 TPR_12 0.8093	35372 ASF1_hist_chap 0.8089

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	98.3475	1.43E-25	257 - 346	superfamily	254867
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	98.3475	1.43E-25	257 - 346	superfamily	254867
PRK12402	replication factor C small subunit 2; Reviewed	-	174.792	4.36E-51	1 - 346	multi-dom	237090

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50732	PHATRDRAFT_50732	201090	258837	445045	Cre16.g679950.t1.2	AT5G27740.1	340838

KEGG

KEGG description	KEGG Pathway
Mismatch repair	map03430

GO Terms

GO:0003677 GO:0005663 GO:0006260 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0005663

DNA replication factor C complex

Details:

A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase.

GO Category:

GO:0006260

DNA replication

Details:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

261867 (rfC_2) PRK12402
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0005663

GO:0006260

GO:0003887

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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