261932 REC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261932 chr_3 REC 2016880 2019610 - REC

Synonyms

NCBI ID Ensembl Genomes exon ID
7452083 Thaps261932.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0160

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

262527

pi 4-kinase
0.9172

263511

Endonuclease_V superfamily
0.907

8420

UbiH
0.9066

34228

Strumpellin superfamily
0.9045

35984

hypothetical protein
0.9031

9910

Peptidase_C19 superfamily
0.8953

262104

PI-PLCc_GDPD_SF superfamily
0.8953

262607

WD40 superfamily
0.8948

263734

LRR_RI superfamily
0.8928

261495

Peptidase_M36
0.8922

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 103.424 1.13E-25 785 - 900 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 103.424 1.13E-25 785 - 900 superfamily 267431
OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain... - 85.8117 1.48E-18 782 - 898 multi-dom 223816

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 154682 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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