26221 (RS13) PTZ00072
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
26221 chr_4 (RS13) PTZ00072 2182110 2183178 - PTZ00072
NCBI ID Ensembl Genomes exon ID
7451389 Thaps26221.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RS7) Ribosomal_S7e
0.8566
(RL13A) Ribosomal_L13
0.8156
(RS15A) PTZ00158
0.8078
(RL12) PLN03072
0.8026
(RL7) Ribosomal_L7_archeal_euk
0.7948
PTZ00084
0.784
(RL8) PTZ00180
0.7803
(RL6) KOW_RPL6
0.7768
(RL13e) Ribosomal_L13e superfamily
0.7642
(Tp_sigma70.3a) Sig70-cyanoRpoD
0.762
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is... cl00349 92.9514 3.37E-25 70 - 145 specific 238213
S15_NS1_EPRS_RNA-bind superfamily S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which... - 92.9514 3.37E-25 70 - 145 superfamily 260373
Ribosomal_S13_N superfamily Ribosomal S13/S15 N-terminal domain; This domain is found at the N-terminus of ribosomal S13 and... - 116.138 2.28E-34 1 - 60 superfamily 191937
Ribosomal_S13_N superfamily Ribosomal S13/S15 N-terminal domain; This domain is found at the N-terminus of ribosomal S13 and... - 116.138 2.28E-34 1 - 60 superfamily 191937
PTZ00072 40S ribosomal protein S13; Provisional - 282.709 2.02E-98 4 - 151 multi-dom 185427
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9199 PHATRDRAFT_9199 270068 300885 414120 Cre07.g331900.t1.2 AT4G00100.1 355091
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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