262381 LSm6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262381 chr_5 LSm6 153623 154115 + LSm6

Synonyms

NCBI ID Ensembl Genomes exon ID
7447254 Thaps262381.2, Thaps262381.3, Thaps262381.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0055

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9435

bd1447

(bd1447) rps6
0.8062

29007

(RL21) PLN00190
0.7403

3608

hypothetical protein
0.7066

33977

(RL36) Ribosomal_L36e
0.7053

26383

PTZ00255
0.697

11146

hypothetical protein
0.6931

bd1472

(bd1472) rpmG
0.6909

8232

hypothetical protein
0.6884

31277

(RS30) Ribosomal_S30
0.6791

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm6 Like-Sm protein 6; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 133.031 5.36E-42 4 - 71 specific 212473
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 133.031 5.36E-42 4 - 71 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8518 PHATRDRAFT_8518 248412 322344 75405 Cre03.g151750.t1.2 AT3G59810.1 499052

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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