262699 YgdL_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262699 chr_6 YgdL_like 294830 296568 - YgdL_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451127 Thaps262699.1, Thaps262699.4, Thaps262699.2, Thaps262699.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

24893

hypothetical protein
0.9429

22499

TrmA
0.9325

21959

hypothetical protein
0.9121

15424

hypothetical protein
0.9034

16287

Pkinase
0.9019

20626

hypothetical protein
0.9007

26492

PRK05385
0.9006

42821

PRK14333
0.9006

21245

MPP_superfamily superfamily
0.9001

8541

PRK00142
0.8958

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical... cl17196 249.829 5.50E-80 85 - 324 specific 238384
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 249.829 5.50E-80 85 - 324 superfamily 266547
COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [... - 212.928 2.90E-65 59 - 324 multi-dom 224100

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41002 PHATRDRAFT_41002 225801 194318 102870 Cre03.g159400.t1.2 AT5G37530.1 468262

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0004842 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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