262926 PLN02788
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262926 chr_6 PLN02788 1262550 1263922 + PLN02788

Synonyms

NCBI ID Ensembl Genomes exon ID
7442403 Thaps262926.2, Thaps262926.1, Thaps262926.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0480

Most Highly Correlated Transcripts

30701

PRK05279
0.9281

268443

SAICAR_synt_Sc
0.9252

27003

MetAP1
0.9168

3180

hypothetical protein
0.9143

35136

NA
0.9083

36419

RabGAP-TBC
0.9065

24525

hypothetical protein
0.9047

32468

STKc_CDC2L1
0.9028

2540

hypothetical protein
0.9027

3693

SWIB
0.901

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II... cl00268 268.645 1.51E-87 113 - 340 specific 238277
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 268.645 1.51E-87 113 - 340 superfamily 260313
FDX-ACB Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some... cl08386 99.4221 1.70E-25 357 - 440 specific 214893
FDX-ACB superfamily Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some... - 99.4221 1.70E-25 357 - 440 superfamily 263619
PLN02788 phenylalanine-tRNA synthetase - 668.007 0 60 - 440 multi-dom 215422

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 227827 310658 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004826 GO:0005524 GO:0006432 GO:0005737 GO:0004812 GO:0006418 GO:0009328 -

GO:0004826

phenylalanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006432

phenylalanyl-tRNA aminoacylation

Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0009328

phenylalanine-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).
GO Category: 
CC

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