262946 (CPF1) FAD_binding_7
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
262946 chr_6 (CPF1) FAD_binding_7 1321991 1323720 + FAD_binding_7
NCBI ID Ensembl Genomes exon ID
7442714 Thaps262946.2, Thaps262946.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0073
Normalized Mean Residue
Thaps_bicluster_0092
0.42
AarF
0.8732
Chloroa_b-bind
0.8568
hypothetical protein
0.8518
p450 superfamily
0.8509
(bd1403) NA
0.8438
TPT
0.8368
(bd1441) ccsA
0.836
PRK05444
0.8338
(bd1095) NA
0.82
COG1691
0.8188
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 294.157 3.50E-95 232 - 518 superfamily 251955
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 294.157 3.50E-95 232 - 518 superfamily 251955
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 145.81 6.60E-41 17 - 155 superfamily 250195
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 145.81 6.60E-41 17 - 155 superfamily 250195
PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] - 288.836 1.03E-90 16 - 503 multi-dom 223492
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27429 PHATRDRAFT_27429 137610 133684 42748 Cre06.g278251.t1.1 AT3G15620.1 259573
KEGG description KEGG Pathway
Circadian rhythm - mammal map04710
GO:0003913 GO:0006281 GO:0003904 -

DNA photolyase activity

Details: 
Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF
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