263116 rubredoxinThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263116	chr_7	rubredoxin	608081	608671	+	rubredoxin

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449180	Thaps263116.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0071

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0174	0.29	24 0.00055

Most Highly Correlated Transcripts

bd718 (bd718) PRK10387 0.9244	38608 SDR_a5 0.921	bd1192 (bd1192) Acyl_ACP_Desat 0.9132	plastid_psb28 0.9019	4737 hypothetical protein 0.8988	38306 Chloroa_b-bind 0.8915
268192 Zip superfamily 0.889	14192 PLN02449 0.888	22673 NA 0.8876	36669 TPT 0.8867

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
rubredoxin		Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small...	cl00202	72.3386	2.86E-17	98 - 149	specific	238372
rubredoxin_like superfamily		Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes...	-	72.3386	2.86E-17	98 - 149	superfamily	260256
COG1773		Rubredoxin [Energy production and conversion]	-	70.0158	2.27E-16	91 - 149	multi-dom	224687

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16606	PHATRDRAFT_16606	204354	192676	46707	Cre07.g315150.t1.2	AT1G54500.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0046872 -

Add comment

Log in to post comments