263212 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263212 chr_7 SCP superfamily 1179752 1180881 - SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447088 Thaps263212.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0277

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

263213

SCP superfamily
0.8779

30701

PRK05279
0.8694

261400

NA
0.8456

31003

gpsA
0.8354

35136

NA
0.8353

4524

DHQS
0.8292

9772

TOPEUc
0.8286

7607

Methyltransf_31
0.8284

38707

Aldolase_Class_I superfamily
0.8217

9028

hypothetical protein
0.8177

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 82.2578 3.54E-19 212 - 346 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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