31003 gpsA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31003 chr_1 gpsA 1113283 1114476 - gpsA

Synonyms

NCBI ID Ensembl Genomes exon ID
7451512 Thaps31003.2, Thaps31003.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0256
 0.42

Most Highly Correlated Transcripts

6028

NA
0.9227

262977

NA
0.9161

bd624

(bd624) Glyco_transf_34 superfamily
0.9109

261126

DadA
0.9074

38285

(PMSR1) MsrA
0.9021

25068

hypothetical protein
0.9021

13393

PLN02321
0.9011

23516

hypothetical protein
0.8974

bd1192

(bd1192) Acyl_ACP_Desat
0.8971

261400

NA
0.8959

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_Gly3P_dh_N superfamily NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate... - 170.1 1.90E-51 16 - 173 superfamily 250446
NAD_Gly3P_dh_N superfamily NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate... - 170.1 1.90E-51 16 - 173 superfamily 250446
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 161.98 1.85E-48 192 - 341 superfamily 254224
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 161.98 1.85E-48 192 - 341 superfamily 254224
gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated - 395.207 8.26E-137 16 - 343 multi-dom 234629

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8975 PHATRDRAFT_8975 180647 303732 53015 Cre12.g511150.t1.2 AT2G40690.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005975 GO:0016614 GO:0004367 GO:0006072 GO:0009331 GO:0005737 GO:0016616 GO:0046168 GO:0051287 -

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0004367

glycerol-3-phosphate dehydrogenase [NAD+] activity

Details: 
Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+.
GO Category: 
MF

GO:0006072

glycerol-3-phosphate metabolic process

Details: 
The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0009331

glycerol-3-phosphate dehydrogenase complex

Details: 
An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0046168

glycerol-3-phosphate catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

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