263213 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263213 chr_7 SCP superfamily 1185219 1186654 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450649 Thaps263213.1, Thaps263213.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0277

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

4108

hypothetical protein
0.907

263212

SCP superfamily
0.8779

267979

HCO3_cotransp superfamily
0.8373

42946

PTZ00308
0.8331

2540

hypothetical protein
0.8249

30701

PRK05279
0.8227

268859

(GGTB1) PLN03201
0.8221

268443

SAICAR_synt_Sc
0.8201

24790

Nitro_FMN_reductase superfamily
0.82

263397

(PGAM4) HP_PGM_like
0.8177

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 70.7018 9.13E-15 281 - 418 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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