263269 (PSY3) Isoprenoid_Biosyn_C1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263269	chr_7	(PSY3) Isoprenoid_Biosyn_C1 superfamily	1642470	1643412	-	Isoprenoid_Biosyn_C1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450725	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0187

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0089	0.36	110 0.00075

Most Highly Correlated Transcripts

40675 (GALE2) PLN02240 0.9098	6889 hypothetical protein 0.9048	11187 hypothetical protein 0.8997	261400 NA 0.8995	22589 EMP24_GP25L 0.8932	5643 PC4 0.8901
11439 hypothetical protein 0.888	5922 hypothetical protein 0.8875	2515 nst superfamily 0.8847	2862 HA 0.8839

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Isoprenoid_Biosyn_C1 superfamily		Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (...	-	106.339	1.63E-26	89 - 195	superfamily	260263

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	233859	306179	68943	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments