263355 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263355	chr_8	COG3899	297807	301295	-	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450115	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0164

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0015	0.38

Most Highly Correlated Transcripts

5273 DUF221 superfamily 0.8197	5660 hypothetical protein 0.817	1748 hypothetical protein 0.8164	21092 hypothetical protein 0.8163	25052 hypothetical protein 0.8117	22727 RCC1 0.8062
20907 hypothetical protein 0.8012	4573 hypothetical protein 0.7983	20869 hypothetical protein 0.7966	262824 COG4581 0.7952

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	77.1177	4.20E-16	32 - 225	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	77.1177	4.20E-16	32 - 225	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	250.393	3.87E-70	33 - 866	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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