22727 RCC1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22727 chr_5 RCC1 1143201 1147408 + RCC1

Synonyms

NCBI ID Ensembl Genomes exon ID
7450059 Thaps22727.2, Thaps22727.1, Thaps22727.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0425

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0047
 0.45

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9093

22087

hypothetical protein
0.9041

262675

AAA
0.8959

25198

HA
0.8908

263997

(APA1) Adaptin_N
0.8875

263599

COG3899
0.8813

263994

Adaptin_N
0.8803

21133

COG3899
0.875

24063

COG3899
0.8739

31075

PDEase_I
0.8738

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 63.3147 4.01E-12 503 - 555 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 63.3147 4.01E-12 503 - 555 superfamily 249843

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45032 PHATRDRAFT_45032 151574 165220 Not available Not available Not available 498697

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005634 GO:0008270 GO:0008766 GO:0016881 GO:0018169 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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