263381 lacZ
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263381 chr_8 lacZ 442334 446491 - lacZ

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0379

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

bd446

(bd446) HrpA
0.8947

bd1949

(bd1949) NA
0.8549

5788

TFIIS_M
0.853

1268

hypothetical protein
0.8413

3660

COG5038
0.8391

bd1870

(bd1870) NA
0.8335

bd1465

(bd1465) PKc_like superfamily
0.8303

bd875

(bd875) NA
0.826

22940

ARGLU
0.8259

1595

hypothetical protein
0.825

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_2_C superfamily Glycosyl hydrolases family 2, TIM barrel domain; This family contains beta-galactosidase, beta-... - 319.726 5.95E-100 451 - 750 superfamily 251563
Bgal_small_N superfamily Beta galactosidase small chain; This domain comprises the small chain of dimeric beta-... - 193.571 4.73E-55 869 - 1088 superfamily 243528
Glyco_hydro_2_N superfamily Glycosyl hydrolases family 2, sugar binding domain; This family contains beta-galactosidase, beta-... - 149.331 5.32E-41 131 - 330 superfamily 251564
Glyco_hydro_2_N superfamily Glycosyl hydrolases family 2, sugar binding domain; This family contains beta-galactosidase, beta-... - 149.331 5.32E-41 131 - 330 superfamily 251564
lacZ beta-D-galactosidase; Reviewed - 717.48 0 104 - 1088 multi-dom 236548

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3832 PHATRDRAFT_3832 Not available 230919 429204 Cre08.g379450.t1.1 AT3G54440.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004565 GO:0005975 GO:0009341 GO:0004553 -

GO:0004565

beta-galactosidase activity

Details: 
Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0009341

beta-galactosidase complex

Details: 
A protein complex that possesses beta-galactosidase activity, i.e. catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. In E. coli, the complex is a homotetramer; dimeric and hexameric beta-galactosidase complexes have been observed in other species.
GO Category: 
CC

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any O-glycosyl bond.
GO Category: 
MF

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