31758 UBCc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31758 chr_2 UBCc 2444386 2445086 + UBCc

Synonyms

NCBI ID Ensembl Genomes exon ID
7452932 Thaps31758.2, Thaps31758.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Most Highly Correlated Transcripts

bd621

(bd621) NA
0.8793

bd1939

(bd1939) NA
0.8651

24414

(MAP2) PTZ00053
0.8497

263554

SK
0.8393

bd381

(bd381) NA
0.8372

262616

(MYB22)
0.8336

24110

hypothetical protein
0.8261

12836

EEP superfamily
0.8256

18388

UBCc
0.8132

33088

Obg_CgtA
0.8127

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... cl00154 134.637 1.29E-40 12 - 145 specific 238117
UBCc superfamily Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... - 134.637 1.29E-40 12 - 145 superfamily 260221

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 370211 Not available AT5G05080.2 Not available

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

GO:0004840

NA

Details: 
NA
GO Category: 
NA

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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