263641 InfB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263641 chr_10 InfB 320064 322923 + InfB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0069
 0.35

Most Highly Correlated Transcripts

32395

RNA_pol
0.944

26071

(PSB_1) Ntn_hydrolase superfamily
0.9344

39540

Alpha_ANH_like_II
0.933

264345

SpoU
0.9304

27873

PLN02274
0.9304

21462

(rpoT) rpot-like RNA polymerase
0.9254

8541

PRK00142
0.9179

bd1876

(bd1876) NatB_MDM20 superfamily
0.9171

42226

PLN03233
0.9166

11949

Nop14
0.9131

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF2_eIF5B Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to... cl17170 202.317 2.55E-60 316 - 503 specific 206674
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 202.317 2.55E-60 316 - 503 superfamily 266525
IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic... cl02787 103.719 5.10E-26 514 - 606 specific 239673
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 88.3117 9.22E-21 743 - 831 superfamily 261449
mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation... cl02787 88.3117 9.22E-21 743 - 831 specific 239663
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 88.3117 9.22E-21 743 - 831 superfamily 261449
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 82.1095 2.17E-18 622 - 727 superfamily 256778
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 82.1095 2.17E-18 622 - 727 superfamily 256778
InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] - 419.262 6.04E-137 311 - 832 multi-dom 223606

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 196357 252506 Not available Not available Not available 317138

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003743 GO:0005525 GO:0006413 GO:0006412 GO:0003924 GO:0008547 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments