263742 Synaptobrevin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263742 chr_10 Synaptobrevin 1053542 1054166 - Synaptobrevin

Synonyms

NCBI ID Ensembl Genomes exon ID
7449348 Thaps263742.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0212

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

29117

vATP-synt_E
0.9246

11479

hypothetical protein
0.9183

23399

PTZ00184
0.915

32945

(SDH1) sdhB
0.9076

10856

hypothetical protein
0.9064

16295

FBPase
0.9063

29053

V-ATPase_C superfamily
0.9044

22792

Rab1_Ypt1
0.9024

3582

Rab6
0.901

36592

HMGB-UBF_HMG-box
0.8967

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 72.572 7.29E-17 103 - 172 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 72.572 7.29E-17 103 - 172 superfamily 250253

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16798 PHATRDRAFT_16798 267682 181579 444996 Not available Not available 348837

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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