36592 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36592 chr_11a HMGB-UBF_HMG-box 547405 547804 - HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7443323 Thaps36592.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9379

263515

RimL
0.9343

39173

ATP-synt_D
0.9159

31014

AP-4_Mu4_Cterm
0.9138

16295

FBPase
0.9073

39299

(ARF3) Arf1_5_like
0.9038

bd758

(bd758) NA
0.9032

31598

cyclophilin superfamily
0.9027

269320

(DGD2) UGD_SDR_e
0.9024

bd463

(bd463) Aa_trans superfamily
0.9013

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 66.8825 1.20E-15 62 - 127 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 66.8825 1.20E-15 62 - 127 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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