264064 SbcC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264064 chr_13 SbcC 877741 881786 + SbcC

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0193

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0194
 0.41

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9146

260758

TFCD_C
0.9023

4108

hypothetical protein
0.8912

25263

Patatin_and_cPLA2 superfamily
0.887

263504

sensory_box
0.878

7601

hypothetical protein
0.8762

3331

Bac_rhamnosid superfamily
0.8723

263349

COG4178
0.865

37862

S_TKc
0.8623

23130

NT_PAP_TUTase
0.8621

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] - 90.5899 1.10E-18 736 - 1209 multi-dom 223496

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45350 PHATRDRAFT_45350 179585 321292 110346 Cre13.g602950.t2.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 GO:0005524 GO:0016887 GO:0016787 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

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