264621 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264621	chr_19b_31	COG3899	55330	59847	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444388	Thaps264621.8, Thaps264621.6, Thaps264621.2, Thaps264621.4, Thaps264621.7, Thaps264621.3, Thaps264621.5, Thaps264621.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0395

Most Highly Correlated Transcripts

261019 HECTc 0.9041	268011 Peptidase_M8 superfamily 0.9022	21535 hypothetical protein 0.8988	24682 hypothetical protein 0.8985	4873 hypothetical protein 0.8972	6608 CAP10 superfamily 0.8971
268232 COG3899 0.8962	2742 DUF1336 superfamily 0.8934	9503 PTZ00121 0.8916	24660 hypothetical protein 0.8915

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	77.1177	6.95E-16	350 - 540	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	77.1177	6.95E-16	350 - 540	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	259.253	2.47E-72	350 - 1182	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments