6608 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6608	chr_6	CAP10 superfamily	2024191	2027019	-	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446377	Thaps6608.6, Thaps6608.2, Thaps6608.4, Thaps6608.3, Thaps6608.5, Thaps6608.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0425

Most Highly Correlated Transcripts

15417 AAA 0.9221	11085 hypothetical protein 0.9159	21364 Peptidase_C19 superfamily 0.9136	268232 COG3899 0.9132	27556 HSH155 0.9085	31822 WD40 0.9036
9677 hypothetical protein 0.9034	268011 Peptidase_M8 superfamily 0.9022	25288 Sec6 superfamily 0.901	263866 AAK superfamily 0.8979

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	71.299	5.69E-14	557 - 664	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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